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Author Altimiras, F.; Uszczynska-Ratajczak, B.; Camara, F.; Vlasova, A.; Palumbo, E.; Newhouse, S.; Deacon, R.M.J.; Farias, L.A.E.; Hurley, M.J.; Loyola, D.E.; Vasquez, R.A.; Dobson, R.; Guigo, R.; Cogram, P. pdf  doi
openurl 
  Title Brain Transcriptome Sequencing of a Natural Model of Alzheimer's Disease Type
  Year 2017 Publication Frontiers In Aging Neuroscience Abbreviated Journal Front. Aging Neurosci.  
  Volume 9 Issue Pages 8 pp  
  Keywords Alzheimer's disease; Octodon degus; RNA-seq; gene expression; animal models  
  Abstract  
  Address [Altimiras, Francisco; Farias, Leandro A. E.] Univ Adolfo Ibanez, Fac Sci & Engn, Santiago, Chile, Email: fjaltimiras@gmail.com;  
  Corporate Author Thesis  
  Publisher Frontiers Media Sa Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1663-4365 ISBN Medium  
  Area Expedition Conference  
  Notes WOS:000396812400001 Approved  
  Call Number UAI @ eduardo.moreno @ Serial 860  
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Author Perez-Lara, G.; Moyano, T.C.; Vega, A.; Larrondo, L.F.; Polanco, R.; Alvarez, J.M.; Aguayo, D.; Canessa, P. doi  openurl
  Title The Botrytis cinerea Gene Expression Browser Type
  Year 2023 Publication Journal of Fungi Abbreviated Journal J. Fungi  
  Volume 9 Issue 1 Pages 84  
  Keywords Botrytis cinerea; RNA-Seq; phytopathogen; transcriptomics; Botrytis Expression Browser; BEB  
  Abstract For comprehensive gene expression analyses of the phytopathogenic fungus Botrytis cinerea, which infects a number of plant taxa and is a cause of substantial agricultural losses worldwide, we developed BEB, a web-based B. cinerea gene Expression Browser. This computationally inexpensive web-based application and its associated database contain manually curated RNA-Seq data for B. cinerea. BEB enables expression analyses of genes of interest under different culture conditions by providing publication-ready heatmaps depicting transcript levels, without requiring advanced computational skills. BEB also provides details of each experiment and user-defined gene expression clustering and visualization options. If needed, tables of gene expression values can be downloaded for further exploration, including, for instance, the determination of differentially expressed genes. The BEB implementation is based on open-source computational technologies that can be deployed for other organisms. In this case, the new implementation will be limited only by the number of transcriptomic experiments that are incorporated into the platform. To demonstrate the usability and value of BEB, we analyzed gene expression patterns across different conditions, with a focus on secondary metabolite gene clusters, chromosome-wide gene expression, previously described virulence factors, and reference genes, providing the first comprehensive expression overview of these groups of genes in this relevant fungal phytopathogen. We expect this tool to be broadly useful in B. cinerea research, providing a basis for comparative transcriptomics and candidate gene identification for functional assays.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 2309-608X ISBN Medium  
  Area Expedition Conference  
  Notes WOS:000917555600001 Approved  
  Call Number UAI @ alexi.delcanto @ Serial 1756  
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