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Author (up) Narum, S.R.; Di Genova, A.; Micheletti, S.J.; Maass, A. doi  openurl
  Title Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon Type Journal Article
  Year 2018 Publication Proceedings Of The Royal Society B-Biological Sciences Abbreviated Journal Proc. R. Soc. B-Biol. Sci.  
  Volume 285 Issue 1883 Pages 9 pp  
  Keywords evolution; ecology; genomics  
  Abstract A broad portfolio of phenotypic diversity in natural organisms can buffer against exploitation and increase species persistence in disturbed ecosystems. The study of genomic variation that accounts for ecological and evolutionary adaptation can represent a powerful approach to extend understanding of phenotypic variation in nature. Here we present a chromosome-level reference genome assembly for Chinook salmon (Oncorhynchus tshawytscha; 2.36 Gb) that enabled association mapping of life-history variation and phenotypic traits for this species. Whole-genome re-sequencing of populations with distinct life-history traits provided evidence that divergent selection was extensive throughout the genome within and among phylogenetic lineages, indicating that a broad portfolio of phenotypic diversity exists in this species that is related to local adaptation and life-history variation. Association mapping with millions of genome-wide SNPs revealed that a genomic region of major effect on chromosome 28 was associated with phenotypes for premature and mature arrival to spawning grounds and was consistent across three distinct phylogenetic lineages. Our results demonstrate how genomic resources can enlighten the genetic basis of known phenotypes in exploited species and assist in clarifying phenotypic variation that may be difficult to observe in naturally occurring organisms.  
  Address [Narum, Shawn R.] Hagerman Genet Lab, Columbia River Intertribal Fish Commiss, Hagerman, ID 83332 USA, Email: nars@critfc.org  
  Corporate Author Thesis  
  Publisher Royal Soc Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0962-8452 ISBN Medium  
  Area Expedition Conference  
  Notes WOS:000439907900018 Approved no  
  Call Number UAI @ eduardo.moreno @ Serial 891  
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