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Morgante, V., Lopez-Lopez, A., Flores, C., Gonzalez, M., Gonzalez, B., Vasquez, M., et al. (2010). Bioaugmentation with Pseudomonas sp strain MHP41 promotes simazine attenuation and bacterial community changes in agricultural soils. FEMS Microbiol. Ecol., 71(1), 114–126.
Abstract: Bioremediation is an important technology for the removal of persistent organic pollutants from the environment. Bioaugmentation with the encapsulated Pseudomonas sp. strain MHP41 of agricultural soils contaminated with the herbicide simazine was studied. The experiments were performed in microcosm trials using two soils: soil that had never been previously exposed to s-triazines (NS) and soil that had > 20 years of s-triazine application (AS). The efficiency of the bioremediation process was assessed by monitoring simazine removal by HPLC. The simazine-degrading microbiota was estimated using an indicator for respiration combined with most-probable-number enumeration. The soil bacterial community structures and the effect of bioaugmentation on these communities were determined using 16S RNA gene clone libraries and FISH analysis. Bioaugmentation with MHP41 cells enhanced simazine degradation and increased the number of simazine-degrading microorganisms in the two soils. In highly contaminated NS soil, bioaugmentation with strain MHP41 was essential for simazine removal. Comparative analysis of 16S rRNA gene clone libraries from NS and AS soils revealed high bacterial diversity. Bioaugmentation with strain MHP41 promoted soil bacterial community shifts. FISH analysis revealed that bioaugmentation increased the relative abundances of two phylogenetic groups (Acidobacteria and Planctomycetes) in both soils. Although members of the Archaea were metabolically active in these soils, their relative abundance was not altered by bioaugmentation.
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Perez-Pantoja, D., Donoso, R., Agullo, L., Cordova, M., Seeger, M., Pieper, D. H., et al. (2012). Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales. Environ. Microbiol., 14(5), 1091–1117.
Abstract: The relevance of the beta-proteobacterial Burkholderiales order in the degradation of a vast array of aromatic compounds, including several priority pollutants, has been largely assumed. In this review, the presence and organization of genes encoding oxygenases involved in aromatics biodegradation in 80 Burkholderiales genomes is analysed. This genomic analysis underscores the impressive catabolic potential of this bacterial lineage, comprising nearly all of the central ring-cleavage pathways reported so far in bacteria and most of the peripheral pathways involved in channelling of a broad diversity of aromatic compounds. The more widespread pathways in Burkholderiales include protocatechuate ortho ring-cleavage, catechol ortho ring-cleavage, homogentisate ring-cleavage and phenylacetyl-CoA ring-cleavage pathways found in at least 60% of genomes analysed. In general, a genus-specific pattern of positional ordering of biodegradative genes is observed in the catabolic clusters of these pathways indicating recent events in its evolutionary history. In addition, a significant bias towards secondary chromosomes, now termed chromids, is observed in the distribution of catabolic genes across multipartite genomes, which is consistent with a genus-specific character. Strains isolated from environmental sources such as soil, rhizosphere, sediment or sludge show a higher content of catabolic genes in their genomes compared with strains isolated from human, animal or plant hosts, but no significant difference is found among Alcaligenaceae, Burkholderiaceae and Comamonadaceae families, indicating that habitat is more of a determinant than phylogenetic origin in shaping aromatic catabolic versatility.
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Vergara, C., Munoz, R., Campos, J. L., Seeger, M., & Jeison, D. (2016). Influence of light intensity on bacterial nitrifying activity in algal-bacterial photobioreactors and its implications for microalgae-based wastewater treatment. Int. Biodeterior. Biodegrad., 114, 116–121.
Abstract: The influence of irradiance on the nitrifying activity in photobioreactors of a bacterial consortium enriched from a wastewater treatment bioreactor was assessed using independent ammonium oxidation kinetic batch tests and respirometric assays. Culture irradiance below 250 μmol m(-2) s(-1) did not show a significant effect on nitrification activity, while irradiance at 500 and 1250 μmol m(-2) s(-1) caused a decrease of 20 and 60% in the specific total ammonium nitrogen removal rates and a reduction of 26 and 71% in the specific NO3- production rates, respectively. However, no significant influence of irradiance on the affinity constant of NH4+ oxidation was observed. The increasing nitrite accumulation at higher light intensities suggested a higher light sensitivity of nitrite oxidizers. Additionally, NH4+ oxidation respirometric assays showed a decrease in the oxygen uptake of 14 and 50% at 500 and 1250 μmol m(-2) s(-1), respectively. The experimental determination of the light extinction coefficient (lambda) of the nitrifying bacterial consortium (lambda = 0.0003 m(2) g(-1)) and of Chlorella sorokiniana (lambda = 0.1045 m(2) g(-1)) allowed the estimation of light penetration in algal-bacterial high rate algal ponds, which showed that photo inhibition of nitrifying bacteria can be significantly mitigated in the presence of high density microalgal cultures. 2016 Elsevier Ltd. All rights reserved.
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