Abstract: Given an elementary cellular automaton (ECA) with local transition rule R, two different types of local transitions are identified: the ones in which a cell remains in its current state, called inactive transitions, and the ones in which the cell changes its current state, which are called active transitions. The number of active transitions of a rule is called its activity value. Based on latter identification, a rule R-1 is called a sub-rule of R-2 if the set of active transitions of R-1 is a subset of the active transitions of R-2.
In this paper, the notion of sub-rule for elementary cellular automata is introduced and explored: first, we consider a lattice that illustrates relations of nonequivalent elementary cellular automata according to nearby sub-rules. Then, we introduce statistical measures that allow us to compare rules and sub-rules. Finally, we explore the possible similarities in the dynamics of a rule with respect to its sub-rules, obtaining both empirical and theoretical results.

Abstract: In this paper we study the dynamical behavior of Boolean networks with firing memory, namely Boolean networks whose vertices are updated synchronously depending on their proper Boolean local transition functions so that each vertex remains at its firing state a finite number of steps. We prove in particular that these networks have the same computational power than the classical ones, i.e. any Boolean network with firing memory composed of m vertices can be simulated by a Boolean network by adding vertices. We also prove general results on specific classes of networks. For instance, we show that the existence of at least one delay greater than 1 in disjunctive networks makes such networks have only fixed points as attractors. Moreover, for arbitrary networks composed of two vertices, we characterize the delay phase space, i.e. the delay values such that networks admits limit cycles or fixed points. Finally, we analyze two classical biological models by introducing delays: the model of the immune control of the lambda\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\lambda $$\end{document}-phage and that of the genetic control of the floral morphogenesis of the plant Arabidopsis thaliana.

Abstract: Cells in a fungal hyphae are separated by internal walls (septa). The septa have tiny pores that allow cytoplasm flowing between cells. Cells can close their septa blocking the flow if they are injured, preventing fluid loss from the rest of filament. This action is achieved by spe-cial organelles called Woronin bodies. Using the controllable pores as an inspiration we advance one and two-dimensional cellular automata into Elementary fungal cellular automata (EFCA) and Majority fungal automata (MFA) by adding a concept of Woronin bodies to the cell state transition rules. EFCA is a cellular automaton where the commu-nications between neighboring cells can be blocked by the activation of the Woronin bodies (Wb), allowing or blocking the flow of infor-mation (represented by a cytoplasm and chemical elements it carries) between them. We explore a novel version of the fungal automata where the evolution of the system is only affected by the activation of the Wb. We explore two case studies: the Elementary Fungal Cellular Automata (EFCA), which is a direct application of this variant for elementary cel-lular automata rules, and the Majority Fungal Automata (MFA), which correspond to an application of the Wb to two dimensional automaton with majority rule with Von Neumann neighborhood. By studying the EFCA model, we analyze how the 256 elementary cellular automata rules are affected by the activation of Wb in different modes, increasing the complexity on applied rule in some cases. Also we explore how a consensus over MFA is affected when the continuous flow of informa-tion is interrupted due to the activation of Woronin bodies.