Abstract: Several bacteria use the plant hormone indole-3-acetic acid (IAA) as a sole carbon and energy source. A cluster of genes (named iac) encoding IAA degradation has been reported in Pseudomonas putida 1290, but the functions of these genes are not completely understood. The plant-growth-promoting rhizobacterium Paraburkholderia phytofirmans PsJN harbors iac gene homologues in its genome, but with a different gene organization and context than those of P. putida 1290. The iac gene functions enable P. phytofirmans to use IAA as a sole carbon and energy source. Employing a heterologous expression system approach, P. phytofirmans iac genes with previously undescribed functions were associated with specific biochemical steps. In addition, two uncharacterized genes, previously unreported in P. putida and found to be related to major facilitator and tautomerase superfamilies, are involved in removal of an IAA metabolite called dioxindole-3-acetate. Similar to the case in strain 1290, IAA degradation proceeds through catechol as intermediate, which is subsequently degraded by ortho-ring cleavage. A putative two-component regulatory system and a LysR-type regulator, which apparently respond to IAA and dioxindole-3-acetate, respectively, are involved in iac gene regulation in P. phytofirmans. These results provide new insights about unknown gene functions and complex regulatory mechanisms in IAA bacterial catabolism. IMPORTANCE This study describes indole-3-acetic acid (auxin phytohormone) degradation in the well-known betaproteobacterium P. phytofirmans PsJN and comprises a complete description of genes, some of them with previously unreported functions, and the general basis of their gene regulation. This work contributes to the understanding of how beneficial bacteria interact with plants, helping them to grow and/or to resist environmental stresses, through a complex set of molecular signals, in this case through degradation of a highly relevant plant hormone.

Abstract: The bewildering morphological diversity found in cells is one of the starkest illustrations of lifes ability to self-organize. Yet the morphogenetic mechanisms that produce the multifarious shapes of cells are still poorly understood. The shared similarities between the walled cells of prokaryotes, many protists, fungi, and plants make these groups particularly appealing to begin investigating how morphological diversity is generated at the cell level. In this review, I attempt a first classification of the different modes of surface deformation used by walled cells. Five modes of deformation were identified: inextensional bending, equi-area shear, elastic stretching, processive intussusception, and chemorheological growth. The two most restrictive modesuinextensional and equi-area deformationsuare embodied in the exine of pollen grains and the wall-like pellicle of euglenoids, respectively. For these modes, it is possible to express the deformed geometry of the cell explicitly in terms of the undeformed geometry and other easily observable geometrical parameters. The greatest morphogenetic power is reached with the processive intussusception and chemorheological growth mechanisms that underlie the expansive growth of walled cells. A comparison of these two growth mechanisms suggests a possible way to tackle the complexity behind wall growth.

Abstract: Let f be a complex-valued harmonicmapping defined in the unit disk D. We introduce the following notion: we say that f is a Bloch-type function if its Jacobian satisfies This gives rise to a new class of functions which generalizes and contains the well-known analytic Bloch space. We give estimates for the schlicht radius, the growth and the coefficients of functions in this class. We establish an analogue of the theorem which, roughly speaking, states that for. analytic log. is Bloch if and only if. is univalent.

Abstract: Coastal upwelling regions already constitute hot spots of ocean acidification as naturally acidified waters are brought to the surface. This effect could be exacerbated by ocean acidification and warming, both caused by rising concentrations of atmospheric CO2. Along the Chilean coast, upwelling supports highly productive fisheries and aquaculture activities. However, during recent years, there has been a documented decline in the national production of the native scallop Argopecten purpuratus. We assessed the combined effects of temperature and pCO(2)-driven ocean acidification on the growth rates and shell characteristics of this species farmed under the natural influence of upwelling waters occurring in northern Chile (30 degrees S, Tongoy Bay). The experimental scenario representing current conditions (14 degrees C, pH similar to 8.0) were typical of natural values recorded in Tongoy Bay, whilst conditions representing the low pH scenario were typical of an adjacent upwelling area (pH similar to 7.6). Shell thickness, weight, and biomass were reduced under low pH (pH similar to 7.7) and increased temperature (18 degrees C) conditions. At ambient temperature (14 degrees C) and low pH, scallops showed increased shell dissolution and low growth rates. However, elevated temperatures ameliorated the impacts of low pH, as evidenced by growth rates in both pH treatments at the higher temperature treatment that were not significantly different from the control treatment. The impact of low pH at current temperature on scallop growth suggests that the upwelling could increase the time required for scallops to reach marketable size. Mortality of farmed scallops is discussed in relation to our observations of multiple environmental stressors in this upwelling-influenced area.

Abstract: Plant rhizosphere and internal tissues may constitute a relevant habitat for soil bacteria displaying high catabolic versatility towards xenobiotic aromatic compounds. Root exudates contain various molecules that are structurally related to aromatic xenobiotics and have been shown to stimulate bacterial degradation of aromatic pollutants in the rhizosphere. The ability to degrade specific aromatic components of root exudates could thus provide versatile catabolic bacteria with an advantage for rhizosphere colonization and growth. In this work, Cupriavidus pinatubonensis JMP134, a well-known aromatic compound degrader (including the herbicide 2,4-dichlorophenoxyacetate, 2,4-D), was shown to stably colonize Arabidopsis thaliana and Acacia caven plants both at the rhizoplane and endorhizosphere levels and to use root exudates as a sole carbon and energy source. No deleterious effects were detected on these colonized plants. When a toxic concentration of 2,4-D was applied to colonized A. caven, a marked resistance was induced in the plant, showing that strain JMP134 was both metabolically active and potentially beneficial to its host. The role for the beta-ketoadipate aromatic degradation pathway during plant root colonization by C. pinatubonensis JMP134 was investigated by gene inactivation. A C. pinatubonensis mutant derivative strain displayed a reduced ability to catabolise root exudates isolated from either plant host. In this mutant strain, a lower competence in the rhizosphere of A. caven was also shown, both in gnotobiotic in vitro cultures and in plant/soil microcosms.

Abstract: Synthetic microbial communities (SynComs) are a useful tool for a more realistic understanding of the outcomes of multiple biotic interactions where microbes, plants, and the environment are players in time and space of a multidimensional and complex system. Toward a more in-depth overview of the knowledge that has been achieved using SynComs in the rhizosphere, a systematic review of the literature on SynComs was performed to identify the overall rationale, design criteria, experimental procedures, and outcomes of in vitro or in planta tests using this strategy. After an extensive bibliography search and a specific selection process, a total of 30 articles were chosen for further analysis, grouping them by their reported SynCom size. The reported SynComs were constituted with a highly variable number of members, ranging from 3 to 190 strains, with a total of 1,393 bacterial isolates, where the three most represented phyla were Proteobacteria, Actinobacteria, and Firmicutes. Only four articles did not reference experiments with SynCom on plants, as they considered only microbial in vitro studies, whereas the others chose different plant models and plant-growth systems; some of them are described and reviewed in this article. Besides, a discussion on different approaches (bottom-up and top-down) to study the microbiome role in the rhizosphere is provided, highlighting how SynComs are an effective system to connect and fill some knowledge gaps and to have a better understanding of the mechanisms governing these multiple interactions. Although the SynCom approach is already helpful and has a promising future, more systematic and standardized studies are needed to harness its full potential.

Abstract: The combined effect of increased ocean warming and elevated carbon dioxide in seawater is expected to have significant physiological and ecological consequences at many organizational levels of the marine ecosystem. In the present study, juvenile mussels Mytilus chilensis were reared for 80 din a factorial combination of two temperatures (12 and 16 degrees C) and three pCO(2) levels (380, 700, and 1000 μatm). We investigated the combined effects of increasing seawater temperature and pCO(2) on the physiological performance (i.e. feeding, metabolism, and growth). Lower clearance rate (CR) occurred at the highest pCO(2) concentration (1000 μatm) compared with the control (380 μatm) and with the intermediate concentration of pCO(2) (700 μatm). Conversely, CR was significantly higher at 16 degrees C than at 12 degrees C. Significant lower values of oxygen uptake were observed in mussels exposed to 1000 μatm pCO(2) level compared with those exposed to 380 μatm pCO(2). Scope for growth (SFG) was significantly lower at the highest pCO(2) concentration compared with the control. Mussels exposed to 700 μatm pCO(2) did not show significantly different SFG from the other two pCO(2) treatments. SFG was significantly higher at 16 degrees C than at 12 degrees C. This might be explained because the experimental mussels were exposed to temperatures experienced in their natural environment, which are within the range of thermal tolerance of the species. Our results suggest that the temperature rise within the natural range experienced by M. chilensis generates a positive effect on the processes related with energy gain (i.e. feeding and absorption) to be allocated to growth. In turn, the increase in the pCO(2) level of 1000 μatm, independent of temperature, adversely affects this species, with significantly reduced energy allocated to growth (SFG) compared with the control treatment.

Abstract: Forest ecosystems are recognized for their large capacity to store carbon (C) in their aboveground and belowground biomass and soil pools. While the distribution of C among ecosystem pools has been extensively studied, less is known about nitrogen (N) and phosphorus (P) pools and how these stocks relate to each other. There is also a need to understand how biotic and abiotic ecosystem properties drive the magnitude and distribution of CN-P stocks. We studied a temperate rainforest in southern South America to answer the following questions: 1) how are C-N-P total stocks distributed among the different ecosystem pools?, 2) how do C:N, C:P and N:P ratios vary among ecosystem pools?, and 3) which are the main biotic and abiotic drivers of C-N-P stocks? We established 33 circular plots to estimate C, N, and P stocks in different pools (i.e. trees, epiphytes, understory, necromass, leaf litter, and soil) and a set of biotic (e.g., tree density and richness) and abiotic variables (e.g., air temperature, humidity and soil depth). We used structural equation modeling to identify the relative importance of environmental drivers on C-N-P stocks. We found that total ecosystem stocks (mean +/- SE) were 1062 +/- 58 Mg C ha-1, 28.8 +/- 1.5 Mg N ha-1, and 347 +/- 12.5 kg P ha-1. The soil was the largest ecosystem pool, containing 68%, 92%, and 73% of the total C, N, and P stocks, respectively. Compared to representative temperate forests, the soil of this forest contains the largest concentrations and stocks of C and N. The low P stock and wide soil C:P and N:P ratios suggest that P may be limiting forest productivity. The ecosystem C-N-P stocks were mainly driven by abiotic properties measured in the study area, however for N stocks, variables such as plant diversity and canopy openness were also relevant. Our results provide evidence about the importance not only of understanding the differences in C, N, and P stocks but also of the factors that drive such differences. This is key to inform conservation policies related to preserving old-growth forests in southern South America, which indeed are facing a rapid land-use change process.

Abstract: As holobiont, a plant is intrinsically connected to its microbiomes. However, some characteristics of these microbiomes, such as their taxonomic composition, biological and evolutionary role, and especially the drivers that shape them, are not entirely elucidated. Reports on the microbiota of Arabidopsis thaliana first appeared more than ten years ago. However, there is still a lack of a comprehensive understanding of the vast amount of information that has been generated using this holobiont. The main goal of this review was to perform an in-depth, exhaustive, and systematic analysis of the literature regarding the Arabidopsis-microbiome interaction. A core microbiota was identified as composed of a few bacterial and non-bacterial taxa. The soil (and, to a lesser degree, air) were detected as primary microorganism sources. From the plant perspective, the species, ecotype, circadian cycle, developmental stage, environmental responses, and the exudation of metabolites were crucial factors shaping the plant-microbe interaction. From the microbial perspective, the microbe-microbe interactions, the type of microorganisms belonging to the microbiota (i.e., beneficial or detrimental), and the microbial metabolic responses were also key drivers. The underlying mechanisms are just beginning to be unveiled, but relevant future research needs were identified. Thus, this review provides valuable information and novel analyses that will shed light to deepen our understanding of this plant holobiont and its interaction with the environment.

Abstract: ince the detection of the first case of COVID-19 in Chile on March 3(rd), 2020, a total of 513,188 cases, including similar to 14,302 deaths have been reported in Chile as of November 2(nd), 2020. Here, we estimate the reproduction number throughout the epidemic in Chile and study the effectiveness of control interventions especially the effectiveness of lockdowns by conducting short-term forecasts based on the early transmission dynamics of COVID-19. Chile's incidence curve displays early sub-exponential growth dynamics with the deceleration of growth parameter, p, estimated at 0.8 (95% CI: 0.7, 0.8) and the reproduction number, R, estimated at 1.8 (95% CI: 1.6, 1.9). Our findings indicate that the control measures at the start of the epidemic significantly slowed down the spread of the virus. However, the relaxation of restrictions and spread of the virus in low-income neighborhoods in May led to a new surge of infections, followed by the reimposition of lockdowns in Greater Santiago and other municipalities. These measures have decelerated the virus spread with R estimated at similar to 0.96 (95% CI: 0.95, 0.98) as of November 2(nd), 2020. The early sub-exponential growth trend (p similar to 0.8) of the COVID-19 epidemic transformed into a linear growth trend (p similar to 0.5) as of July 7(th), 2020, after the reimposition of lockdowns. While the broad scale social distancing interventions have slowed the virus spread, the number of new COVID-19 cases continue to accrue, underscoring the need for persistent social distancing and active case detection and isolation efforts to maintain the epidemic under control.
Author summary
In context of the ongoing COVID-19 pandemic, Chile has been one of the hardest-hit countries in Latin America, struggling to contain the spread of the virus. In this manuscript, we employ renewal equation to estimate the reproduction number (R) for the early ascending phase of the COVID-19 epidemic and by July 7(th), 2020 to guide the magnitude and intensity of interventions required to combat the COVID-19 epidemic. We also estimate the instantaneous reproduction number throughout the epidemic in Chile. Moreover, we generate short-term forecasts based on the epidemic trajectory using phenomenological models, and assess counterfactual scenarios to understand any additional resources required to contain the virus' spread. Our results indicate early sustained transmission of SARS-CoV-2. However, the initial control measures at the start of the epidemic significantly slowed down the spread of the virus. The easing of COVID-19 restrictions in April led to a new wave of infections, followed by the re-imposition of lockdowns in Greater Santiago and several municipalities. Most recent estimates of reproduction number indicate a decline in the virus transmission. While broad-scale social distancing interventions have slowed the virus spread, the number of new COVID-19 cases continue to accrue, underscoring the need for persistent social distancing efforts.