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Altimiras, F., Garcia, J. A., Palacios-Garcia, I., Hurley, M. J., Deacon, R., Gonzalez, B., et al. (2021). Altered Gut Microbiota in a Fragile X Syndrome Mouse Model. Front. Neurosci., 15, 653120.
Abstract: The human gut microbiome is the ecosystem of microorganisms that live in the human digestive system. Several studies have related gut microbiome variants to metabolic, immune and nervous system disorders. Fragile X syndrome (FXS) is a neurodevelopmental disorder considered the most common cause of inherited intellectual disability and the leading monogenetic cause of autism. The role of the gut microbiome in FXS remains largely unexplored. Here, we report the results of a gut microbiome analysis using a FXS mouse model and 16S ribosomal RNA gene sequencing. We identified alterations in the fmr1 KO2 gut microbiome associated with different bacterial species, including those in the genera Akkermansia, Sutterella, Allobaculum, Bifidobacterium, Odoribacter, Turicibacter, Flexispira, Bacteroides, and Oscillospira. Several gut bacterial metabolic pathways were significantly altered in fmr1 KO2 mice, including menaquinone degradation, catechol degradation, vitamin B6 biosynthesis, fatty acid biosynthesis, and nucleotide metabolism. Several of these metabolic pathways, including catechol degradation, nucleotide metabolism and fatty acid biosynthesis, were previously reported to be altered in children and adults with autism. The present study reports a potential association of the gut microbiome with FXS, thereby opening new possibilities for exploring reliable treatments and non-invasive biomarkers.
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Cortes, M. P., Mendoza, S. N., Travisany, D., Gaete, A., Siegel, A., Cambiazo, V., et al. (2017). Analysis of Piscirickettsia salmonis Metabolism Using Genome-Scale Reconstruction, Modeling, and Testing. Front. Microbiol., 8, 15 pp.
Abstract: Piscirickettsia salmonis is an intracellular bacterial fish pathogen that causes piscirickettsiosis, a disease with highly adverse impact in the Chilean salmon farming industry. The development of effective treatment and control methods for piscireckttsiosis is still a challenge. To meet it the number of studies on P. salmonis has grown in the last couple of years but many aspects of the pathogen's biology are still poorly understood. Studies on its metabolism are scarce and only recently a metabolic model for reference strain LF-89 was developed. We present a new genomescale model for P. salmonis LF-89 with more than twice as many genes as in the previous model and incorporating specific elements of the fish pathogen metabolism. Comparative analysis with models of different bacterial pathogens revealed a lower flexibility in P. salmonis metabolic network. Through constraint-based analysis, we determined essential metabolites required for its growth and showed that it can benefit from different carbon sources tested experimentally in new defined media. We also built an additional model for strain A1-15972, and together with an analysis of P. salmonis pangenome, we identified metabolic features that differentiate two main species clades. Both models constitute a knowledge-base for P. salmonis metabolism and can be used to guide the efficient culture of the pathogen and the identification of specific drug targets.
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de Kraker, J., Kujawa-Roeleveld, K., Villena, M. J., & Pabon-Pereira, C. (2019). Decentralized Valorization of Residual Flows as an Alternative to the Traditional Urban Waste Management System: The Case of Penalolen in Santiago de Chile. Sustainability, 11(22), 26 pp.
Abstract: Urban residual flows contain significant amounts of valuable nutrients, which, if recovered, could serve as input for the own city needs or those of its immediate surroundings. In this study, the possibilities for decentralized recovery of nutrient rich residual flows in Santiago, Chile, are studied by means of a case study considering technical and socio-economic criteria. In particular, we calculate circularity indicators for organic matter (OM), nitrogen (N), and phosphorus (P) and cost-benefits of household and community on-site technological alternatives. Kitchen waste (KW) and garden residues (GR) as well as urine were considered as system inputs whereas urban agriculture, municipality green, or peri-urban agriculture were the considered destinations for nutrients recovered. The technologies studied were anaerobic digestion, vermicomposting, and composting, while urine storage and struvite precipitation were considered for nutrient recovery from urine. Material flow analysis was used to visualize the inputs and outputs of the baseline situation (the traditional urban waste management system), and of the different household and municipality resource recovery scenarios (the decentralized valorization systems). Our findings show that decentralized valorization of KW and GR are a clear win-win policy, since they can not only produce important environmental benefits for the city in the long run, but also important cost savings considering the landfill fees and residues transportation of the current centralized waste management system.
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Garcia-Huidobro, M. R., Poupin, M. J., Urrutia, C., Rodriguez-Navarro, A. B., Grenier, C., Vivanco, J. F., et al. (2021). An intrapopulational study of organic compounds and biomechanical properties of the shell of the Antarctic bivalve Laternula elliptica (P. P. King, 1832) at King George Island. Polar Biol., 44, 1343–1352.
Abstract: Laternula elliptica is a key bivalve species and widely distributed around the Antarctic continent. This bivalve has been the study subject in several studies centered on ecological, physiological, biochemical, and behavioral patterns. However, little is known about the chemistry and the biomechanical properties of the shells of this mollusk. Here, we present the first report of the intra-population variability in the organic composition and mechanical properties of L. elliptica shells. Further, we analyze different morphological traits and their association with the metabolism of a population of L. elliptica from King George Island, Western Antarctic Peninsula. The summer metabolic rates and the hepatosomatic index values indicate good health conditions of this clam's population. Shell periostracum chemistry is quite similar to bivalves from temperate regions, but the relative amount of protein increased ca. five-fold in shells of L. elliptica. The microhardness is approximately 32% lower than in bivalves from temperate regions. Our characterization of the L. elliptica shells suggests that periostracum chemistry could be specially fitted to avoid shell carbon exposure to dissolution (e.g., in corrosive acidified seawater). In contrast, the reduction in shell hardness may result from prioritizing behavioral (burial) and shell repairing strategies to confront biological (predators) and physical disturbances (e.g., ice scouring). Similar studies in other Antarctic mollusks will help understand the role of shell structure and function in confronting projected climate changes in the Antarctic ocean.
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Lardies, M. A., Arias, M. B., Poupin, M. J., Manriquez, P. H., Torres, R., Vargas, C. A., et al. (2014). Differential response to ocean acidification in physiological traits of Concholepas concholepas populations. J. Sea Res., 90, 127–134.
Abstract: Phenotypic adaptation to environmental fluctuations frequently occurs by preexisting plasticity and its role as a major component of variation in physiological diversity is being widely recognized. Few studies have considered the change in phenotypic flexibility among geographic populations in marine calcifiers to ocean acidification projections, despite the fact that this type of study provides understanding about how the organism may respond to this chemical change in the ocean. We examined the geographic variation in CO2 seawater concentrations in the phenotype and in the reaction norm of physiological traits using a laboratory mesocosm approach with short-term acclimation in two contrasting populations (Antofagasta and Calfuco) of the intertidal snail Concholepas concholepas. Our results show that elevated pCO(2) conditions increase standard metabolic rates in both populations of the snail juveniles, likely due to the higher energy cost of homeostasis. juveniles of C concholepas in the Calfuco (southern) population showed a lower increment of metabolic rate in high-pCO(2) environments concordant with a lesser gene expression of a heat shock protein with respect to the Antofagasta (northern) population. Combined these results indicate a negative effect of ocean acidification on whole-organism functioning of C. concholepas. Finally, the significant Population x pCO(2) level interaction in both studied traits indicates that there is variation between populations in response to high-pCO(2) conditions. (C) 2014 Elsevier BM. All rights reserved.
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Luengwilai, K., Yu, J. W., Jimenez, R. C., Thitisaksakul, M., Vega, A., Dong, S. Y., et al. (2022). Ectopic Expression of Arabidopsis thaliana zDof1.3 in Tomato (Solanum lycopersicum L.) Is Associated with Improved Greenhouse Productivity and Enhanced Carbon and Nitrogen Use. Int. J. Mol. Sci., 23(19), 11229.
Abstract: A large collection of transgenic tomato lines, each ectopically expressing a different Arabidopsis thaliana transcription factor, was screened for variants with alterations in leaf starch. Such lines may be affected in carbon partitioning, and in allocation to the sinks. We focused on 'L4080', which harbored an A. thaliana zDof (DNA-binding one zinc finger) isoform 1.3 (AtzDof1.3) gene, and which had a 2-4-fold higher starch-to-sucrose ratio in source leaves over the diel (p < 0.05). Our aim was to determine whether there were associated effects on productivity. L4080 plants were altered in nitrogen (N) and carbon (C) metabolism. The N-to-C ratio was higher in six-week-old L4080, and when treated with 1/10 N, L4080 growth was less inhibited compared to the wild-type and this was accompanied by faster root elongation (p < 0.05). The six-week-old L4080 acquired 42% more dry matter at 720 ppm CO2, compared to ambient CO2 (p < 0.05), while the wild-type (WT) remained unchanged. GC-MS-TOF data showed that L4080 source leaves were enriched in amino acids compared to the WT, and at 49 DPA, fruit had 25% greater mass, higher sucrose, and increased yield (25%; p < 0.05) compared to the WT. An Affymetrix cDNA array analysis suggested that only 0.39% of the 9000 cDNAs were altered by 1.5-fold (p < 0.01) in L4080 source leaves. C-14-labeling of fruit disks identified potential differences in 14-DPA fruit metabolism suggesting that post-transcriptional regulation was important. We conclude that AtzDof1.3 and the germplasm derived therefrom, should be investigated for their 'climate-change adaptive' potential.
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Osores, S. J. A., Lagos, N. A., Martin, V. S., Manriquez, P. H., Vargas, C. A., Torres, R., et al. (2017). Plasticity and inter-population variability in physiological and life-history traits of the mussel Mytilus chilensis: A reciprocal transplant experiment. J. Exp. Mar. Biol. Ecol., 490, 1–12.
Abstract: Geographically widespread species must cope with environmental differences between habitats. Information concerning geographic variations in response to climate variability is critical because many morphological, life history and physiological traits show variation across space. Reciprocal transplant experiments have shown to be relevant to evaluate the role of phenotypic plasticity and potential local adaptation in ecophysiological responses when coping with environmental variability. In this study, we characterize through reciprocal transplant experiments the reaction norms of morphological, biochemical, physiological and life-history traits between two intertidal populations of the socioeconomically important mussel Mytilus chilensis, inhabiting contrasting local environments (estuarine vs coastal habitats). We found a gradient in phenotypic plasticity with plastic trait responses in metabolic, ingestion and clearance rates, and in HsP(70) gene expression, and some traits with responses more canalized as growth and calcification rates. This emphasizes that responses not only vary across different local populations but also in different traits in M. chilensis, thus it is difficult to establish an overall trend of the responses at integrated organismal level. Moreover, the synergistic interaction of factors such as salinity and carbonate system parameters evaluated make it necessary to study the response at the population level with emphasis on benthic species important in aquaculture. Finally, field studies such as this one are useful for documenting the patterns of traits variation that occur in nature, identifying possible causes of such variation, and generating testable hypotheses for future controlled experiments. (C) 2017 Elsevier B.V. All rights reserved.
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Ramajo, L., Fernandez, C., Nunez, Y., Caballero, P., Lardies, M. A., & Poupin, M. J. (2019). Physiological responses of juvenile Chilean scallops (Argopecten purpuratus) to isolated and combined environmental drivers of coastal upwelling. ICES J. Mar. Sci., 76(6), 1836–1849.
Abstract: Coastal biota is exposed to continuous environmental variability as a consequence of natural and anthropogenic processes. Responding to heterogeneous conditions requires the presence of physiological strategies to cope with the environment. Ecosystems influenced by upwelling endure naturally cold, acidic and hypoxic conditions, nevertheless they sustain major fisheries worldwide. This suggests that species inhabiting upwelling habitats possess physiological adaptations to handle high environmental variability. Here, we assessed the impact of the main upwelling drivers (temperature, pH and oxygen) in isolation and combined on eco-physiological responses of Chilean scallop Argopecten purpuratus. A. purpuratus responded to hypoxia by increasing their metabolic performance to maintain growth and calcification. Calcification was only affected by pH and increased under acidic conditions. Further, A. purpuratus juveniles prioritized calcification at the expense of growth under upwelling conditions. Increasing temperature had a significant impact by enhancing the physiological performance of A. purpuratus juveniles independently of oxygen and pH conditions, but this was associated with earlier and higher mortalities. Our results suggest that A. purpuratus is acclimated to short-term colder, acidic and hypoxic conditions, and provide important information of how this species responds to the heterogeneous environment of upwelling, which is significantly relevant in the climatic context of upwelling intensification.
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Ramajo, L., Prado, L., Rodriguez-Navarro, A. B., Lardies, M. A., Duarte, C. M., & Lagos, N. A. (2016). Plasticity and trade-offs in physiological traits of intertidal mussels subjected to freshwater-induced environmental variation. Mar. Ecol.-Prog. Ser., 553, 93–109.
Abstract: Environmental gradients play an important role in shaping geographic variability in coastal marine populations. Thus, the ability of organisms to cope with these changes will depend on their potential to acclimatize, or adapt, to these new environmental conditions. We investigated the spatial variability in biological responses shown by Perumytilus purpuratus mussels collected from 2 intertidal areas experiencing contrasting freshwater input influences (river-influenced vs. marine conditions). To highlight the role of plasticity and adaptive potential in biological responses, we performed a reciprocal-transplant experiment and measured relevant phenotypic traits including mortality, growth, calcification, metabolism, and chemical composition of the shell periostra cum. We determined that mussels exposed to river-influenced conditions had increased metabolic rates and reduced growth rates, as compared to mussels experiencing marine conditions (p < 0.05). While the energy investment strategies of the 2 local populations resulted in similar net calcification rates, these rates decreased significantly when mussels were transplanted to the river-influenced site. Stressful conditions at the river-influenced site were evidenced by decreased survivorship across treatments. Freshwater inputs modify the organic composition of the shell periostracum through a significant reduction in polysaccharides. Although our field experiment did not identify specific environmental factors underlying these contrasting phenotypic changes, the results imply that plasticity plays a strong role when P. purpuratus is exposed to some combination of natural (e.g. salinity) and anthropogenic influences (e.g. pollution), and that the lack of exposure to freshwater may promote less tolerant mussels with greater potential for local adaptation.
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Ramajo, L., Rodriguez-Navarro, A. B., Duarte, C. M., Lardies, M. A., & Lagos, N. A. (2015). Shifts in shell mineralogy and metabolism of Concholepas concholepas juveniles along the Chilean coast. Mar. Freshw. Res., 66(12), 1147–1157.
Abstract: Along the west coast of South America, from the tropical zone to the Patagonian waters, there is a significant latitudinal gradient in seawater temperature, salinity and carbonate chemistry. These physical-chemical changes in seawater induce morphological and physiological responses in calcifying organisms, which may alter their energy budget and calcification processes. In this study, we study the organism energy maintenance (i.e. metabolic rate) and mineralogical composition of the shell of the juvenile marine snails Concholepas concholepas (Gastropoda: Muricidae), collected from benthic populations located similar to 2000km apart, varies across geographic regions along the Chilean coast. We found that in juvenile snails, the calcite:aragonite ratio in the pallial shell margin (i.e. newly deposited shell) increase significantly from northern to southern populations and this increase in calcite precipitation in the shell of juveniles snails was associated with a decrease in oxygen consumption rates in these populations. Our result suggests that calcite secretion may be favoured when metabolic rates are lowered, as this carbonate mineral phase might be less energetically costly for the organism to precipitate. This result is discussed in relation to the natural process such as coastal upwelling and freshwater inputs that promote geographic variation in levels of pH and carbonate saturation state in seawater along the Chilean coast.
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Urrejola, S., Nespolo, R., & Lardies, M. A. (2011). Diet-induced developmental plasticity in life histories and energy metabolism in a beetle. Rev. Chil. Hist. Nat., 84(4), 523–533.
Abstract: Adaptive phenotypic plasticity, has been recognized as an important strategy by which organisms maximize fitness in variable environments, which vary through development. A disassociation among stages should represent a null effect of the environment experienced during early ontogeny in the expression of adult traits. Food quality greatly influences survival, development and reproduction in many arthropod herbivores. We examined the effects of diet protein in physiological and life-history traits in the yellow mealworm beetle Tenebrio molitor through ontogeny. We established four experimental treatments: Low Protein (LP), Low Protein Control (LPC), High Protein (HP), and High Protein Control (HPC) with recently eclosioned larvae each. Individuals were maintained on the same diet or transferred to the opposite diet for all pupae period and almost all adult period. Contrary to the expected, the duration of life-cycle, larval growth rate and body mass in T molitor were similar in diet treatments. We found intra-individual trade-offs between environmental diet (rich or poor in protein content) during larval phase and egg number. Larvae fed on a protein-deficient diet exhibited significantly higher respiratory rates than larvae fed on a rich protein diet. Compensatory feeding could act in T molitor larvae indicating differences in metabolism but not in growth rate, body mass and life-cycle characteristics. Our results demonstrate the plasticity of reproductive and metabolic traits and life-cycle characteristics of T molitor and how changes that occur in relation to diet can have profound effects on progeny and female fitness.
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