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Barrientos-Diaz, L., Gidekel, M., & Gutierrez-Moraga, A. (2008). Characterization of rhizospheric bacteria isolated from Deschampsia antarctica Desv. World J. Microbiol. Biotechnol., 24(10), 2289–2296.
Abstract: Deschampsia antarctica Desv. is the only gramineae capable of colonizing the Antarctic due to the region's extreme climate and soil environment. In the present research, bacteria colonizing the rhizospheric soil of D. antarctica were isolated and characterized. The soil studies showed that D. antarctica possesses a wide spectrum of psychrotolerant bacteria with extensive and varied antibiotic resistance, as well as heavy metal tolerance. The bacterial strains isolated from the rhizosphere of D. antarctica also produced a diverse pattern of enzymes. Based on the strain identification with partial characterization of the 16S rRNA gene, the majority of the isolates correspond to different Pseudomonas species, and species of the genus Flavobacterium sp. and Arthrobacter sp. The isolated strains collected from this research constitute a unique collection for future, more detailed taxonomic analysis and physiological characterization, contributing to the search for potential biotechnological uses. These findings and others have great potential for developing new biotechnological products from Antarctic microorganisms.
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De la Iglesia, R., Valenzuela-Heredia, D., Pavissich, J. P., Freyhoffer, S., Andrade, S., Correa, J. A., et al. (2010). Novel polymerase chain reaction primers for the specific detection of bacterial copper P-type ATPases gene sequences in environmental isolates and metagenomic DNA. Lett. Appl. Microbiol., 50(6), 552–562.
Abstract: Aims: In the last decades, the worldwide increase in copper wastes release by industrial activities like mining has driven environmental metal contents to toxic levels. For this reason, the study of the biological copper-resistance mechanisms in natural environments is important. Therefore, an appropriate molecular tool for the detection and tracking of copper-resistance genes was developed. Methods and Results: In this work, we designed a PCR primer pair to specifically detect copper P-type ATPases gene sequences. These PCR primers were tested in bacterial isolates and metagenomic DNA from intertidal marine environments impacted by copper pollution. As well, T-RFLP fingerprinting of these gene sequences was used to compare the genetic composition of such genes in microbial communities, in normal and copper-polluted coastal environments. New copper P-type ATPases gene sequences were found, and a high degree of change in the genetic composition because of copper exposure was also determined. Conclusions: This PCR based method is useful to track bacterial copper-resistance gene sequences in the environment. Significance and Impact of the Study: This study is the first to report the design and use of a PCR primer pair as a molecular marker to track bacterial copper-resistance determinants, providing an excellent tool for long-term analysis of environmental communities exposed to metal pollution.
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Diaz-Rullo, J., Rodriguez-Valdecantos, G., Torres-Rojas, F., Cid, L., Vargas, I. T., Gonzalez, B., et al. (2021). Mining for Perchlorate Resistance Genes in Microorganisms From Sediments of a Hypersaline Pond in Atacama Desert, Chile. Front. Microbiol., 12, 723874.
Abstract: Perchlorate is an oxidative pollutant toxic to most of terrestrial life by promoting denaturation of macromolecules, oxidative stress, and DNA damage. However, several microorganisms, especially hyperhalophiles, are able to tolerate high levels of this compound. Furthermore, relatively high quantities of perchlorate salts were detected on the Martian surface, and due to its strong hygroscopicity and its ability to substantially decrease the freezing point of water, perchlorate is thought to increase the availability of liquid brine water in hyper-arid and cold environments, such as the Martian regolith. Therefore, perchlorate has been proposed as a compound worth studying to better understanding the habitability of the Martian surface. In the present work, to study the molecular mechanisms of perchlorate resistance, a functional metagenomic approach was used, and for that, a small-insert library was constructed with DNA isolated from microorganisms exposed to perchlorate in sediments of a hypersaline pond in the Atacama Desert, Chile (Salar de Maricunga), one of the regions with the highest levels of perchlorate on Earth. The metagenomic library was hosted in Escherichia coli DH10B strain and exposed to sodium perchlorate. This technique allowed the identification of nine perchlorate-resistant clones and their environmental DNA fragments were sequenced. A total of seventeen ORFs were predicted, individually cloned, and nine of them increased perchlorate resistance when expressed in E. coli DH10B cells. These genes encoded hypothetical conserved proteins of unknown functions and proteins similar to other not previously reported to be involved in perchlorate resistance that were related to different cellular processes such as RNA processing, tRNA modification, DNA protection and repair, metabolism, and protein degradation. Furthermore, these genes also conferred resistance to UV-radiation, 4-nitroquinoline-N-oxide (4-NQO) and/or hydrogen peroxide (H2O2), other stress conditions that induce oxidative stress, and damage in proteins and nucleic acids. Therefore, the novel genes identified will help us to better understand the molecular strategies of microorganisms to survive in the presence of perchlorate and may be used in Mars exploration for creating perchlorate-resistance strains interesting for developing Bioregenerative Life Support Systems (BLSS) based on in situ resource utilization (ISRU).
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Fukushima, K., Kabir, M., Kanda, K., Obara, N., Fukuyama, M., & Otsuki, A. (2022). Equivalent Circuit Models: An Effective Tool to Simulate Electric/Dielectric Properties of Ores-An Example Using Granite. Materials, 15(13), 4549.
Abstract: The equivalent circuit model is widely used in high-voltage (HV) engineering to simulate the behavior of HV applications for insulation/dielectric materials. In this study, equivalent circuit models were prepared in order to represent the electric and dielectric properties of minerals and voids in a granite rock sample. The HV electric-pulse application shows a good possibility of achieving a high energy efficiency with the size reduction and selective liberation of minerals from rocks. The electric and dielectric properties were first measured, and the mineral compositions were also determined by using a micro-X-ray fluorescence spectrometer. Ten patterns of equivalent circuit models were then prepared after considering the mineral distribution in granite. Hard rocks, as well as minerals, are dielectric materials that can be represented as resistors and capacitors in parallel connections. The values of the electric circuit parameters were determined from the known electric and dielectric parameters of the minerals in granite. The average calculated data of the electric properties of granite agreed with the measured data. The conductivity values were 53.5 pS/m (measurement) and 36.2 pS/m (simulation) in this work. Although there were some differences between the measured and calculated data of dielectric loss (tan delta), their trend as a function of frequency agreed. Even though our study specifically dealt with granite, the developed equivalent circuit model can be applied to any other rock.
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Gutierrez-Jara, J. P., Vogt-Geisse, K., Cabrera, M., Cordova-Lepe, F., & Munoz-Quezada, M. T. (2022). Effects of human mobility and behavior on disease transmission in a COVID-19 mathematical model. Sci. Rep., 12(1), 10840.
Abstract: Human interactions and perceptions about health risk are essential to understand the evolution over the course of a pandemic. We present a Susceptible-Exposed-Asymptomatic-Infectious-Recovered-Susceptible mathematical model with quarantine and social-distance-dependent transmission rates, to study COVID-19 dynamics. Human activities are split across different location settings: home, work, school, and elsewhere. Individuals move from home to the other locations at rates dependent on their epidemiological conditions and maintain a social distancing behavior, which varies with their location. We perform simulations and analyze how distinct social behaviors and restrictive measures affect the dynamic of the disease within a population. The model proposed in this study revealed that the main focus on the transmission of COVID-19 is attributed to the “home” location setting, which is understood as family gatherings including relatives and close friends. Limiting encounters at work, school and other locations will only be effective if COVID-19 restrictions occur simultaneously at all those locations and/or contact tracing or social distancing measures are effectively and strictly implemented, especially at the home setting.
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Karthikeyan, C., Sisubalan, N., Varaprasad, K., Aepuru, R., Yallapu, M. M., Mangalaraja, R. V., et al. (2022). Hybrid nanoparticles from chitosan and nickel for enhanced biocidal activities. New J. Chem., 46(27), 13240–13248.
Abstract: Chitosan (Cs) is highly useful for its 'tunable' function, hence allowing numerous optimizable applications in various fields, including the pharmaceutical industry. This has piqued the medicinal chemist's interest in developing innovative synthetic methodologies to produce a biologically optimistic pharmacophore. In order to design a highly environment-friendly artificial process for the production of Cs/Ni/NiO, hybrid nanoparticles (HNPs) were prepared by an inexpensive chemical synthesis method. The synthesized HNPs were characterized by XRD, DLS, and ATR-FTIR analyses. The morphology and elemental analyses of Cs/Ni/NiO HNPs were investigated using FESEM, TEM, and EDX procedures. Cs/Ni/NiO HNPs bactericidal activity was significant for inhibiting pathogenic bacterial strains, namely, S. aureus and E. coli. Furthermore, Cs/Ni/NiO HNPs exhibited potent cytotoxicity against MCF-7. The findings of the study on the biocompatibility of Cs/Ni/NiO HNPs on the L929 cell lines showed a non-cytotoxic tendency toward normal cells. As a result, the report demonstrated that the chemically engineered Cs/Ni/NiO HNPs have biological properties that are effective against MDR pathogenic bacteria and carcinoma cells. More research is, however, needed to ascertain whether improving the morphology of these Cs/Ni/NiO HNPs will enhance their antibacterial and anticancer properties.
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Markou, G., & Genco, F. (2019). Seismic assessment of small modular reactors: NuScale case study for the 8.8 Mw earthquake in Chile. Nucl. Eng. Des., 342, 176–204.
Abstract: Reducing greenhouse gas emissions and improving energy production sustainability is a paramount of Chile's 2050 energy policy. This though, is difficult to achieve without some degree of nuclear power involvement, given that the geography of the country consists of many areas that are practically off-grid, whereas cannot be developed and financially exploited due to the lack of basic commodities such as water and electricity. Recently small modular reactors (SMRs) have gained lots of attention by both researchers and world policy makers for their promised capabilities of enhanced safety systems, affordable costs and competitive scalability. SMRs can be located in remote areas and at this time are being actively developed in Argentina, USA, Brazil, Russia, China, South Korea, Japan, India and South Africa. Chile's 2010 earthquake and Fukushima's 2011 nuclear disaster have increased significantly both the population's fear and opposition to Nuclear Power Energy for the possible consequences of radiation on the lives of people. This paper aims to study the seismic resistance of a typical nuclear structure, being at time proposed in Small Modular Reactors, by using earthquake conditions typically seen in Chile. Since many designs are under study, a NuScale reactor from USA is analyzed under these extreme loading conditions. The major advantages of the NuScale reactor are in the power scalability (it can go from 1 to 12 reactor cores producing from 60 to 720 MWe), limited nuclear fuel concentration, modules allocated below grade and high strength steel containments fully immersed in water. The cooling effect beyond Design Basis Accident is ensured indefinitely, which induces a significant safety factor in the case of an accident. For the purpose of this study a detailed 3D detailed structural model was developed, reproducing the NuScale reactor's reinforced concrete framing system, where nonlinear analyses was performed to assess the overall mechanical response of the structure. The framing system has been tested under high seismic excitations typically seen in Chile (Mw > 8.0), showing high resistance and capability to cope with the developed forces due to its design. Based on a Soil-Structure Interaction analysis, it was also found that the NuScale framing system manages to maintain a low-stress level at the interaction surface between the foundation and the soil, where the structural system was found to be able to withstand significant earthquake loads. Finally, further investigation is deemed necessary in order to study the potential damages of the structure in the case of other hazards such as tsunami events, blast loads, etc.
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Martinez, C., Briones, F., Aguilar, C., Araya, N., Iturriza, I., Machado, I., et al. (2020). Effect of hot pressing and hot isostatic pressing on the microstructure, hardness, and wear behavior of nickel. Mater. Lett., 273, 127944.
Abstract: Nanocrystalline Ni (Ni-nc) obtained by mechanical milling may present improved mechanical properties paired with high abrasion resistance. Different sintering processes were used to consolidate Nanocrystaline Ni: hot pressed (HP) and hot-isostatic pressed (HIP). The microstructure, mechanical properties, and tribological were evaluated to compare the processes. X-ray diffraction patterns showed that HIP-consolidated specimens had larger crystallite sizes and 37% less microstrain when compared to the HP specimens. The nanohardness of the HIP specimens was also carried out and it was 50% lower than that of HP specimens, whereas its coefficient of friction found was 25% higher. These results show the advantages of the HP process over the HIP since the high pressure. The low sintering temperature of HP inhibited the grain growth, which leads excellent mechanical and tribological properties of Ni. (C) 2020 Elsevier B.V. All rights reserved.
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Ramajo, L., Marba, N., Prado, L., Peron, S., Lardies, M. A., Rodriguez-Navarro, A. B., et al. (2016). Biomineralization changes with food supply confer juvenile scallops (Argopecten purpuratus) resistance to ocean acidification. Glob. Change Biol., 22(6), 2025–2037.
Abstract: Future ocean acidification (OA) will affect physiological traits of marine species, with calcifying species being particularly vulnerable. As OA entails high energy demands, particularly during the rapid juvenile growth phase, food supply may play a key role in the response of marine organisms to OA. We experimentally evaluated the role of food supply in modulating physiological responses and biomineralization processes in juveniles of the Chilean scallop, Argopecten purpuratus, that were exposed to control (pH similar to 8.0) and low pH (pH similar to 7.6) conditions using three food supply treatments (high, intermediate, and low). We found that pH and food levels had additive effects on the physiological response of the juvenile scallops. Metabolic rates, shell growth, net calcification, and ingestion rates increased significantly at low pH conditions, independent of food. These physiological responses increased significantly in organisms exposed to intermediate and high levels of food supply. Hence, food supply seems to play a major role modulating organismal response by providing the energetic means to bolster the physiological response of OA stress. On the contrary, the relative expression of chitin synthase, a functional molecule for biomineralization, increased significantly in scallops exposed to low food supply and low pH, which resulted in a thicker periostracum enriched with chitin polysaccharides. Under reduced food and low pH conditions, the adaptive organismal response was to trade-off growth for the expression of biomineralization molecules and altering of the organic composition of shell periostracum, suggesting that the future performance of these calcifiers will depend on the trajectories of both OA and food supply. Thus, incorporating a suite of traits and multiple stressors in future studies of the adaptive organismal response may provide key insights on OA impacts on marine calcifiers.
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Timmermann, T., Gonzalez, B., & Ruz, G. A. (2020). Reconstruction of a gene regulatory network of the induced systemic resistance defense response in Arabidopsis using boolean networks. BMC Bioinformatics, 21(1), 16 pp.
Abstract: Background An important process for plant survival is the immune system. The induced systemic resistance (ISR) triggered by beneficial microbes is an important cost-effective defense mechanism by which plants are primed to an eventual pathogen attack. Defense mechanisms such as ISR depend on an accurate and context-specific regulation of gene expression. Interactions between genes and their products give rise to complex circuits known as gene regulatory networks (GRNs). Here, we explore the regulatory mechanism of the ISR defense response triggered by the beneficial bacterium Paraburkholderia phytofirmans PsJN in Arabidopsis thaliana plants infected with Pseudomonas syringae DC3000. To achieve this, a GRN underlying the ISR response was inferred using gene expression time-series data of certain defense-related genes, differential evolution, and threshold Boolean networks. Results One thousand threshold Boolean networks were inferred that met the restriction of the desired dynamics. From these networks, a consensus network was obtained that helped to find plausible interactions between the genes. A representative network was selected from the consensus network and biological restrictions were applied to it. The dynamics of the selected network showed that the largest attractor, a limit cycle of length 3, represents the final stage of the defense response (12, 18, and 24 h). Also, the structural robustness of the GRN was studied through the networks' attractors. Conclusions A computational intelligence approach was designed to reconstruct a GRN underlying the ISR defense response in plants using gene expression time-series data of A. thaliana colonized by P. phytofirmans PsJN and subsequently infected with P. syringae DC3000. Using differential evolution, 1000 GRNs from time-series data were successfully inferred. Through the study of the network dynamics of the selected GRN, it can be concluded that it is structurally robust since three mutations were necessary to completely disarm the Boolean trajectory that represents the biological data. The proposed method to reconstruct GRNs is general and can be used to infer other biologically relevant networks to formulate new biological hypotheses.
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